PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03303.1.g00060.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27424.4 Da    PI: 11.0236
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03303.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.12.1e-32148198151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gklyey++
  Zpz_sc03303.1.g00060.1.am.mk 148 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAT 198
                                   79***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.095140200IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-43140199IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-30141201IPR002100Transcription factor, MADS-box
CDDcd002655.34E-41141200No hitNo description
PRINTSPR004045.8E-32142162IPR002100Transcription factor, MADS-box
PROSITE patternPS003500142196IPR002100Transcription factor, MADS-box
PfamPF003191.9E-27149196IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-32162177IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-32177198IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVHGFRRTAM LLRLDWLFAP PQEQGQGMSE SSPSLPTSAG MVMTRWTDAD AGRSAVELQL  60
HDPRRRLHHL PIASPNWSST ASTTPWKPRY SLRLPPHASS TPPRGDRSLF FSSLSCCLSH  120
RRSIHLTRGC EISRQETRAM GRGKVQLKRI ENKINRQVTF SKRRNGLLKK AHEISVLCDA  180
EVAVIVFSPK GKLYEYATDS RYPPVTVGER GEEVVAAAAA LQAQGQAQAQ LRVGNLPPWM  240
LSHLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-19140198159Myocyte-specific enhancer factor 2B
1tqe_Q4e-19140198159Myocyte-specific enhancer factor 2B
1tqe_R4e-19140198159Myocyte-specific enhancer factor 2B
1tqe_S4e-19140198159Myocyte-specific enhancer factor 2B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630612e-77EU963061.1 Zea mays clone 257029 MADS-box transcription factor 15 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-34AGAMOUS-like 8